There's really too many to list and a lot depends on what you are building. Even then, there are usually multiple answer to the question.
- Building: Ant, maven, ...
- Code repo: SVN, CVS, Git, ....
- CI: Hudson, Cruise Control, Luntbuild, Bamboo, ...
- Testing: Junit, easymock, mockito, XmlUnit, HtmlUnit, ...
- Reporting: Cobertura, Emma, FindBugs, JavaDoc, ...
- Project management: XPlanner, GreenHopper, JIRA, ....
- Documentation: Confluence, XWiki, ....
there are the main by my understanding.
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